Transcript: LINC02181:3

Basic information

LNCipedia transcript ID: LINC02181:3 
HGNC Gene Symbol: LINC02181    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2181
Ensembl Gene ID: ENSG00000232190
Ensembl Transcript ID: ENST00000430050
RefSeq ID: NR_126008
Location (hg38): chr16:87057784-87063991
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4083 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000430050; ENST00000430050.2; RP11-134D3.1-001; OTTHUMT00000430784.1; NONHSAT144248; NR_126008; NR_126008.1
Alternative gene names: ENSG00000232190; AC106745.1; ENSG00000232190.2; RP11-134D3.1; OTTHUMG00000175678.1; LINC02181; LOC440390


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.3454 non-coding 
CPAT coding probability 15.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02181:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP1LC3B-4:1
3.1 lnc-MAP1LC3B-6:1
4.0 lnc-MAP1LC3B-6:1
4.1 lnc-MAP1LC3B-6:1
5.0 lnc-MAP1LC3B-6:1
5.1 LINC02181:2
5.2 LINC02181:3