Transcript: LINC02188:12

Basic information

LNCipedia transcript ID: LINC02188:12 
HGNC Gene Symbol: LINC02188    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2188
Ensembl Gene ID: ENSG00000261175
Ensembl Transcript ID: ENST00000569740
Location (hg38): chr16:86722091-86741059
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3775 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569740.5
Alternative gene names: ENSG00000261175.5; CTD-2015G9.2; LINC02188


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.4125 non-coding 
CPAT coding probability 19.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02188:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FOXL1-3:7
4.1 lnc-FOXL1-3:7
5.0 lnc-FOXL1-3:7
5.1 LINC02188:4
5.2 LINC02188:12