Transcript: LINC02192:3

Basic information

LNCipedia transcript ID: LINC02192:3 
HGNC Gene Symbol: LINC02192    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2192
Ensembl Gene ID: ENSG00000261325
Ensembl Transcript ID: ENST00000570024
RefSeq ID: NR_110649
Location (hg38): chr16:47849314-47887130
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1325 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00024268; ENST00000570024.1; AC140542.2-001; OTTHUMT00000429995.1; NONHSAT142307; NR_110649; NR_110649.1
Alternative gene names: XLOC_011928; linc-ITFG1; ENSG00000261325.1; AC140542.2; OTTHUMG00000175449.1; LINC02192; LOC100507534


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.8664 non-coding 
CPAT coding probability 7.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02192:3 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCC12-1:1
3.1 lnc-ABCC12-1:1
4.0 lnc-ABCC12-1:1
4.1 lnc-ABCC12-1:1
5.0 lnc-ABCC12-1:1
5.1 LINC02192:2
5.2 LINC02192:3