Transcript: LINC02198:26

Basic information

LNCipedia transcript ID: LINC02198:26 
HGNC Gene Symbol: LINC02198    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2198
Ensembl Gene ID: ENSG00000249352
Ensembl Transcript ID: ENST00000505371
Location (hg38): chr5:68970692-69029927
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 526 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505371; ENST00000505371.2; RP11-141O11.2-001; OTTHUMT00000368585.2; NONHSAT147336
Alternative gene names: ENSG00000249352; RP11-141O11.2; ENSG00000249352.2; OTTHUMG00000162336.3; ENSG00000249352.3; 7SK; ENSG00000249352.4; LINC02198


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.0783 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02198:26 no no no no

Available literature

  1. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.
  2. Hu (2015), A common set of distinct features that characterize noncoding RNAs across multiple species., Nucleic Acids Res.
  3. Keramati (2015), 7SK small nuclear RNA inhibits cancer cell proliferation through apoptosis induction., Tumour Biol.
  4. Kraus (2015), Long non-coding RNA normalisers in human brain tissue., J Neural Transm (Vienna)
  5. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  6. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  7. Rice (2015), Roles of microRNAs and long-noncoding RNAs in human immunodeficiency virus replication., Wiley Interdiscip Rev RNA
  8. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  9. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  10. Xiong (2015), STAT3‑regulated long non‑coding RNAs lnc‑7SK and lnc‑IGF2‑AS promote hepatitis C virus replication., Mol Med Rep
  11. Abdelmohsen (2013), Senescence-associated lncRNAs: senescence-associated long noncoding RNAs., Aging Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC125-4:4
3.1 lnc-CCDC125-4:2
4.0 lnc-CCDC125-4:2
4.1 lnc-CCDC125-4:2
5.0 lnc-CCDC125-4:2
5.1 LINC02198:11
5.2 LINC02198:26