Transcript: LINC02199:12

Basic information

LNCipedia transcript ID: LINC02199:12 
HGNC Gene Symbol: LINC02199    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2199
Ensembl Gene ID: ENSG00000250198
Ensembl Transcript ID: ENST00000510067
Location (hg38): chr5:8839765-8881525
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1008 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510067; ENST00000510067.1; RP11-143A12.3-001; OTTHUMT00000365864.1; NONHSAT100319
Alternative gene names: ENSG00000250198; RP11-417J1.4; ENSG00000250198.1; RP11-143A12.3; OTTHUMG00000161722.1; LINC02199


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.3113 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02199:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTRR-5:4
3.1 lnc-MTRR-5:3
4.0 lnc-MTRR-5:3
4.1 lnc-MTRR-5:3
5.0 lnc-MTRR-5:3
5.1 LINC02199:7
5.2 LINC02199:12