Transcript: LINC02208:31

Basic information

LNCipedia transcript ID: LINC02208:31 
HGNC Gene Symbol: LINC02208    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2208
Ensembl Gene ID: ENSG00000250891
Ensembl Transcript ID: ENST00000515704
Location (hg38): chr5:118545858-118562056
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 718 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009760; ENST00000515704; ENST00000515704.1; CTD-2281M20.1-001; OTTHUMT00000371162.1; NONHSAT103404
Alternative gene names: XLOC_004965; linc-SEMA6A-2; ENSG00000250891; CTD-2281M20.1; ENSG00000250891.1; OTTHUMG00000162951.2; LINC02208


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.2619 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02208:31 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DTWD2-2:4
3.1 lnc-DTWD2-3:4
4.0 lnc-DTWD2-3:4
4.1 lnc-DTWD2-3:4
5.0 lnc-DTWD2-3:4
5.1 LINC02208:15
5.2 LINC02208:31