Transcript: LINC02209:8

Basic information

LNCipedia transcript ID: LINC02209:8 
HGNC Gene Symbol: LINC02209    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2209
Ensembl Gene ID: ENSG00000253279
Ensembl Transcript ID: ENST00000521245
Location (hg38): chr8:29921819-29953724
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2651 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521245; ENST00000521245.1; RP11-94H18.3-002; OTTHUMT00000375717.1
Alternative gene names: ENSG00000253279; RP11-94H18.3; ENSG00000253279.1; OTTHUMG00000163817.1; FAM183CP; ENSG00000253279.5; LINC02209


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.7123 non-coding 
CPAT coding probability 49.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02209:8 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LEPROTL1-1:2
3.1 lnc-LEPROTL1-1:2
4.0 lnc-LEPROTL1-1:2
4.1 lnc-LEPROTL1-1:2
5.0 lnc-LEPROTL1-1:2
5.1 LINC02209:5
5.2 LINC02209:8