Transcript: LINC02214:4

Basic information

LNCipedia transcript ID: LINC02214:4 
HGNC Gene Symbol: LINC02214    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2214
Ensembl Gene ID: ENSG00000251311
Ensembl Transcript ID: ENST00000504419
Location (hg38): chr5:116742991-116762209
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 707 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009757; ENST00000504419; ENST00000504419.1; RP11-249M12.2-001; OTTHUMT00000370936.1; NONHSAT103377
Alternative gene names: XLOC_004962; linc-SEMA6A-5; ENSG00000251311; RP11-249M12.2; ENSG00000251311.1; OTTHUMG00000162883.1; LINC02214


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.3039 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02214:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEMA6A-3:1
3.1 lnc-SEMA6A-3:1
4.0 lnc-SEMA6A-3:1
4.1 lnc-SEMA6A-3:1
5.0 lnc-SEMA6A-3:1
5.1 LINC02214:2
5.2 LINC02214:4