Transcript: LINC02215:3

Basic information

LNCipedia transcript ID: LINC02215:3 
HGNC Gene Symbol: LINC02215    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2215
Ensembl Gene ID: ENSG00000249128
Ensembl Transcript ID: ENST00000503320
RefSeq ID: NR_104998
Location (hg38): chr5:118596188-118628092
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009496; ENST00000503320; ENST00000503320.1; RP11-2N5.1-001; OTTHUMT00000371166.1; NONHSAT103406; NR_104998; NR_104998.1
Alternative gene names: XLOC_004527; linc-DMXL1-1; ENSG00000249128; RP11-2N5.1; ENSG00000249128.1; OTTHUMG00000162955.1; LINC02215; LOC102467225


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.3826 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02215:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMXL1-1:1
3.1 lnc-DMXL1-1:1
4.0 lnc-DMXL1-1:1
4.1 lnc-DMXL1-1:1
5.0 lnc-DMXL1-1:1
5.1 LINC02215:2
5.2 LINC02215:3