Transcript: LINC02217:27

Basic information

LNCipedia transcript ID: LINC02217:27 
LNCipedia gene ID: LINC02217
Location (hg38): chr5:17403931-17441700
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010635; NONHSAT100632
Alternative gene names: XLOC_004308; linc-PRDM9-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.2516 non-coding 
CPAT coding probability 8.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02217:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-2:2
3.1 lnc-BASP1-3:2
4.0 lnc-BASP1-3:2
4.1 lnc-BASP1-3:2
5.0 lnc-BASP1-3:2
5.1 LINC02217:4
5.2 LINC02217:27