Transcript: LINC02218:6

Basic information

LNCipedia transcript ID: LINC02218:6 
HGNC Gene Symbol: LINC02218    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2218
Ensembl Gene ID: ENSG00000249662
Ensembl Transcript ID: ENST00000504998
RefSeq ID: NR_134270
Location (hg38): chr5:17444010-17483946
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009362; ENST00000504998; ENST00000504998.1; RP11-321E2.4-001; OTTHUMT00000366259.1; NONHSAT100644; NR_134270.1
Alternative gene names: XLOC_004309; linc-PRDM9-7; ENSG00000249662; RP11-321E2.4; ENSG00000249662.1; OTTHUMG00000161869.1; ENSG00000249662.5; LINC02218; LOC102723526


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.8716 non-coding 
CPAT coding probability 6.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02218:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-4:2
3.1 lnc-BASP1-4:2
4.0 lnc-BASP1-4:2
4.1 lnc-BASP1-4:2
5.0 lnc-BASP1-4:2
5.1 LINC02218:3
5.2 LINC02218:6