Transcript: LINC02224:3

Basic information

LNCipedia transcript ID: LINC02224:3 
LNCipedia gene ID: LINC02224
RefSeq ID: NR_131946
Location (hg38): chr5:44495144-44510282
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1100 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_131946.1
Alternative gene names: BRCAT107

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.4341 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02224:3 no no no no

Available literature

  1. Fu (2017), Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis., PLoS ONE
  2. Iyer (2015), The landscape of long noncoding RNAs in the human transcriptome., Nat. Genet.
  3. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC02224:3
5.1 LINC02224:3
5.2 LINC02224:3