Transcript: LINC02224:5

Basic information

LNCipedia transcript ID: LINC02224:5 
HGNC Gene Symbol: LINC02224    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2224
Ensembl Gene ID: ENSG00000249203
Ensembl Transcript ID: ENST00000510758
Location (hg38): chr5:44500632-44510282
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 539 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510758; ENST00000510758.1; RP11-473L15.3-002; OTTHUMT00000368016.1; NONHSAT101333
Alternative gene names: ENSG00000249203; RP11-473L15.3; ENSG00000249203.1; OTTHUMG00000162229.1; LINC02224

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.8184 non-coding 
CPAT coding probability 25.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02224:5 no no no no

Available literature

  1. Fu (2017), Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis., PLoS ONE
  2. Iyer (2015), The landscape of long noncoding RNAs in the human transcriptome., Nat. Genet.
  3. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGF10-1:1
3.1 lnc-FGF10-1:1
4.0 lnc-FGF10-1:1
4.1 lnc-FGF10-1:1
5.0 lnc-FGF10-1:1
5.1 LINC02224:2
5.2 LINC02224:5