Transcript: LINC02227:5

Basic information

LNCipedia transcript ID: LINC02227:5 
HGNC Gene Symbol: LINC02227    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2227
Ensembl Gene ID: ENSG00000276778
Ensembl Transcript ID: ENST00000619068
RefSeq ID: NR_109888
Location (hg38): chr5:158320683-158409773
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3748 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000619068.1; NR_109888.1
Alternative gene names: ENSG00000276778.1; RP11-524N5.1; LINC02227; LOC101927697


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.224 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02227:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-EBF1-8:2
4.1 lnc-EBF1-8:2
5.0 lnc-EBF1-8:2
5.1 LINC02227:3
5.2 LINC02227:5