Transcript: LINC02231:3

Basic information

LNCipedia transcript ID: LINC02231:3 
HGNC Gene Symbol: LINC02231    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2231
Ensembl Gene ID: ENSG00000248995
Ensembl Transcript ID: ENST00000510459
Location (hg38): chr12:64920845-64982524
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510459; ENST00000510459.2; RP11-766N7.4-001; OTTHUMT00000401255.1; NONHSAT029174
Alternative gene names: ENSG00000248995; RP11-766N7.4; ENSG00000248995.2; OTTHUMG00000168830.1; LINC02231


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.6255 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02231:3 no no no no

Available literature

  1. Yao (2017), Long noncoding RNA RP11-766N7.4 functions as a tumor suppressor by regulating epithelial-mesenchymal transition in esophageal squamous cell carcinoma., Biomed. Pharmacother.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WIF1-1:1
3.1 lnc-WIF1-1:1
4.0 lnc-WIF1-1:1
4.1 lnc-WIF1-1:1
5.0 lnc-WIF1-1:1
5.1 LINC02231:2
5.2 LINC02231:3