Transcript: LINC02233:3

Basic information

LNCipedia transcript ID: LINC02233:3 
HGNC Gene Symbol: LINC02233    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2233
Ensembl Gene ID: ENSG00000250488
Ensembl Transcript ID: ENST00000513718
Location (hg38): chr4:159666503-159777784
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 358 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007890; ENST00000513718; ENST00000513718.1; RP11-6C14.1-001; OTTHUMT00000364900.1; NONHSAT099029
Alternative gene names: XLOC_004140; linc-C4orf45-3; ENSG00000250488; RP11-6C14.1; ENSG00000250488.1; OTTHUMG00000161434.1; LINC02233


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.0405 non-coding 
CPAT coding probability 7.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02233:3 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C4orf45-1:1
3.1 lnc-C4orf45-1:1
4.0 lnc-C4orf45-1:1
4.1 lnc-C4orf45-1:1
5.0 lnc-C4orf45-1:1
5.1 LINC02233:2
5.2 LINC02233:3