Transcript: LINC02240:17

Basic information

LNCipedia transcript ID: LINC02240:17 
LNCipedia gene ID: LINC02240
Location (hg38): chr5:124919947-124921598
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 204 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00009501; ENST00000509456; ENST00000509456.1; RP11-284A20.1-001; OTTHUMT00000371293.1; NONHSAT103543
Alternative gene names: XLOC_004535; linc-GRAMD3-5; ENSG00000249423; RP11-284A20.1; ENSG00000249423.1; OTTHUMG00000162992.1; AC109464.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02240:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-43D2.2.1-2:1
3.1 lnc-RP11-43D2.2.1-7:1
4.0 lnc-RP11-43D2.2.1-7:1
4.1 lnc-RP11-43D2.2.1-7:1
5.0 lnc-RP11-43D2.2.1-7:1
5.1 LINC02240:6
5.2 LINC02240:17