Transcript: LINC02240:21

Basic information

LNCipedia transcript ID: LINC02240:21 
LNCipedia gene ID: LINC02240
Location (hg38): chr5:125108204-125149929
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 451 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000512965; ENST00000512965.1; RP11-508M8.1-001; OTTHUMT00000371327.1; NONHSAT103550
Alternative gene names: ENSG00000249365; RP11-508M8.1; ENSG00000249365.1; OTTHUMG00000163010.1; AC110009.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7826 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02240:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-43D2.2.1-8:1
3.1 lnc-RP11-43D2.2.1-13:1
4.0 lnc-RP11-43D2.2.1-13:1
4.1 lnc-RP11-43D2.2.1-13:1
5.0 lnc-RP11-43D2.2.1-13:1
5.1 LINC02240:12
5.2 LINC02240:21