Transcript: LINC02240:23

Basic information

LNCipedia transcript ID: LINC02240:23 
HGNC Gene Symbol: LINC02240    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2240
Ensembl Gene ID: ENSG00000260192
Ensembl Transcript ID: ENST00000564199
RefSeq ID: NR_109887
Location (hg38): chr5:125493261-125602227
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1336 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000564199.1; RP11-756H20.1-001; OTTHUMT00000372369.2; NR_109887; NR_109887.1
Alternative gene names: ENSG00000260192.1; RP11-756H20.1; OTTHUMG00000163260.2; LINC02240; LOC101927460; ENSG00000260192.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.087 non-coding 
CPAT coding probability 2.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02240:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GRAMD3-2:1
4.0 lnc-GRAMD3-2:1
4.1 lnc-GRAMD3-2:1
5.0 lnc-GRAMD3-2:1
5.1 LINC02240:14
5.2 LINC02240:23