Transcript: LINC02247:3

Basic information

LNCipedia transcript ID: LINC02247:3 
HGNC Gene Symbol: LINC02247    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2247
Ensembl Gene ID: ENSG00000223729
Ensembl Transcript ID: ENST00000417135
Location (hg38): chr9:134293931-134295397
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 743 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015890; ENST00000417135; ENST00000417135.1; RP11-145E17.2-001; OTTHUMT00000054944.1; NONHSAT135385
Alternative gene names: XLOC_007884; linc-BRD3-4; ENSG00000223729; RP11-145E17.2; ENSG00000223729.1; OTTHUMG00000020883.1; LINC02247


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.0753 non-coding 
CPAT coding probability 21.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02247:3 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BRD3-3:1
3.1 lnc-BRD3-3:1
4.0 lnc-BRD3-3:1
4.1 lnc-BRD3-3:1
5.0 lnc-BRD3-3:1
5.1 LINC02247:2
5.2 LINC02247:3