Transcript: LINC02257:5

Basic information

LNCipedia transcript ID: LINC02257:5 
HGNC Gene Symbol: LINC02257    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2257
Ensembl Gene ID: ENSG00000238042
Ensembl Transcript ID: ENST00000433576
Location (hg38): chr1:221880981-221918712
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 720 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000738; ENST00000433576; ENST00000433576.1; RP11-815M8.1-001; OTTHUMT00000091109.1; NONHSAT009648; ENST00000433576.5
Alternative gene names: XLOC_001214; linc-DUSP10-1; ENSG00000238042; RP11-815M8.1; ENSG00000238042.1; OTTHUMG00000037423.1; ENSG00000238042.5; LINC02257


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.2575 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02257:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DUSP10-3:2
3.1 lnc-DUSP10-3:2
4.0 lnc-DUSP10-3:2
4.1 lnc-DUSP10-3:2
5.0 lnc-DUSP10-3:2
5.1 LINC02257:3
5.2 LINC02257:5