Transcript: LINC02264:4

Basic information

LNCipedia transcript ID: LINC02264:4 
HGNC Gene Symbol: LINC02264    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2264
Ensembl Gene ID: ENSG00000229565
Ensembl Transcript ID: ENST00000442020
Location (hg38): chr4:117834401-117869948
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 576 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007602; ENST00000442020; ENST00000442020.1; AC108056.1-001; OTTHUMT00000132194.1; NONHSAT097965
Alternative gene names: XLOC_003660; linc-NDST3-1; ENSG00000229565; AC108056.1; ENSG00000229565.1; OTTHUMG00000059447.1; LINC02264


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.0876 non-coding 
CPAT coding probability 5.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02264:4 no no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDST3-2:1
3.1 lnc-NDST3-2:1
4.0 lnc-NDST3-2:1
4.1 lnc-NDST3-2:1
5.0 lnc-NDST3-2:1
5.1 LINC02264:2
5.2 LINC02264:4