Transcript: LINC02275:9

Basic information

LNCipedia transcript ID: LINC02275:9 
HGNC Gene Symbol: LINC02275    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2275
Ensembl Gene ID: ENSG00000248319
Ensembl Transcript ID: ENST00000508313
RefSeq ID: NR_037878
Location (hg38): chr4:169917761-169975902
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4365 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007444; ENST00000508313; ENST00000508313.1; RP11-205M3.3-001; OTTHUMT00000363108.2; NONHSAT099170; NR_037878; NR_037878.1
Alternative gene names: XLOC_004154; linc-C4orf27-1; ENSG00000248319; RP11-205M3.3; ENSG00000248319.1; OTTHUMG00000160949.2; LINC02275; LOC100506085


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.5695 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02275:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MFAP3L-1:1
3.1 lnc-MFAP3L-1:1
4.0 lnc-MFAP3L-2:1
4.1 lnc-MFAP3L-2:1
5.0 lnc-MFAP3L-2:1
5.1 LINC02275:2
5.2 LINC02275:9