Transcript: LINC02338:3

Basic information

LNCipedia transcript ID: LINC02338:3 
HGNC Gene Symbol: LINC02338    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2338
Ensembl Gene ID: ENSG00000277448
Ensembl Transcript ID: ENST00000615202
RefSeq ID: NR_120416
Location (hg38): chr13:58165827-58209483
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2753 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120416; ENST00000615202.1; NR_120416.1
Alternative gene names: ENSG00000277448.1; RP11-538C21.2; LINC02338; LOC101926897


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.2024 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02338:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCDH17-6:1
4.0 lnc-PCDH17-6:1
4.1 lnc-PCDH17-6:1
5.0 lnc-PCDH17-6:1
5.1 LINC02338:2
5.2 LINC02338:3