Transcript: LINC02380:7

Basic information

LNCipedia transcript ID: LINC02380:7 
HGNC Gene Symbol: LINC02380    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2380
Ensembl Gene ID: ENSG00000248505
Ensembl Transcript ID: ENST00000510956
RefSeq ID: NR_125907
Location (hg38): chr4:57425872-57465986
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1038 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007386; ENST00000510956; ENST00000510956.1; RP11-319E12.1-001; OTTHUMT00000361615.3; NR_125907; NR_125907.1
Alternative gene names: XLOC_003548; linc-LPHN3-7; ENSG00000248505; RP11-319E12.1; ENSG00000248505.1; OTTHUMG00000160663.3; LINC02380; LOC101928851


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.1475 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02380:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR2B-2:1
3.1 lnc-POLR2B-2:1
4.0 lnc-POLR2B-2:1
4.1 lnc-POLR2B-2:1
5.0 lnc-POLR2B-2:1
5.1 LINC02380:3
5.2 LINC02380:7