Transcript: LINC02388:6

Basic information

LNCipedia transcript ID: LINC02388:6 
HGNC Gene Symbol: LINC02388    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2388
Ensembl Gene ID: ENSG00000257259
Ensembl Transcript ID: ENST00000550678
Location (hg38): chr12:58565960-58781716
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1975 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550678; ENST00000550678.1; RP11-767I20.1-001; OTTHUMT00000406689.1; NONHSAT029025
Alternative gene names: ENSG00000257259; RP11-767I20.1; ENSG00000257259.1; OTTHUMG00000169964.1; LINC02388


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.6731 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02388:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRIG3-1:2
3.1 lnc-LRIG3-1:2
4.0 lnc-LRIG3-1:2
4.1 lnc-LRIG3-1:2
5.0 lnc-LRIG3-1:2
5.1 LINC02388:3
5.2 LINC02388:6