Transcript: LINC02393:5

Basic information

LNCipedia transcript ID: LINC02393:5 
HGNC Gene Symbol: LINC02393    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2393
Ensembl Gene ID: ENSG00000256597
Ensembl Transcript ID: ENST00000536342
Location (hg38): chr12:127881617-127882991
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536342; ENST00000536342.1; RP11-749H20.4-001; OTTHUMT00000399700.1; NONHSAT031883
Alternative gene names: ENSG00000256597; RP11-749H20.4; ENSG00000256597.1; OTTHUMG00000168424.1; ENSG00000256597.2; FLJ37505; LINC02393


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.5536 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02393:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132C-3:1
3.1 lnc-TMEM132C-3:2
4.0 lnc-TMEM132C-3:2
4.1 lnc-TMEM132C-3:2
5.0 lnc-TMEM132C-3:2
5.1 LINC02393:2
5.2 LINC02393:5