Transcript: LINC02394:3

Basic information

LNCipedia transcript ID: LINC02394:3 
HGNC Gene Symbol: LINC02394    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2394
Ensembl Gene ID: ENSG00000258332
Ensembl Transcript ID: ENST00000549140
Location (hg38): chr12:74039086-74045828
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549140; ENST00000549140.1; RP11-711C17.2-001; OTTHUMT00000405456.1; NONHSAT029495
Alternative gene names: ENSG00000258332; RP11-711C17.2; ENSG00000258332.1; OTTHUMG00000169689.1; LINC02394


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.5418 non-coding 
CPAT coding probability 3.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02394:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATXN7L3B-1:1
3.1 lnc-ATXN7L3B-1:1
4.0 lnc-ATXN7L3B-1:1
4.1 lnc-ATXN7L3B-1:1
5.0 lnc-ATXN7L3B-1:1
5.1 LINC02394:2
5.2 LINC02394:3