Transcript: LINC02396:13

Basic information

LNCipedia transcript ID: LINC02396:13 
HGNC Gene Symbol: LINC02396    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2396
Ensembl Gene ID: ENSG00000258135
Ensembl Transcript ID: ENST00000552768
Location (hg38): chr12:49908882-49911863
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 282 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552768; ENST00000552768.1; RP11-70F11.11-002; OTTHUMT00000405991.1
Alternative gene names: ENSG00000258135; RP11-70F11.11; ENSG00000258135.1; OTTHUMG00000169809.2; ENSG00000258135.5; LINC02396


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.2704 non-coding 
CPAT coding probability 36.74% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02396:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAIM2-1:3
3.1 lnc-FAIM2-1:2
4.0 lnc-FAIM2-1:2
4.1 lnc-FAIM2-1:2
5.0 lnc-FAIM2-1:2
5.1 LINC02396:4
5.2 LINC02396:13