Transcript: LINC02396:17

Basic information

LNCipedia transcript ID: LINC02396:17 
HGNC Gene Symbol: LINC02396    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2396
Ensembl Gene ID: ENSG00000258135
Ensembl Transcript ID: ENST00000551922
Location (hg38): chr12:49908882-49911842
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551922; ENST00000551922.1; RP11-70F11.11-005; OTTHUMT00000405990.1; NONHSAT028148; ENST00000551922.5
Alternative gene names: ENSG00000258135; RP11-70F11.11; ENSG00000258135.1; OTTHUMG00000169809.2; ENSG00000258135.5; LINC02396


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.2704 non-coding 
CPAT coding probability 4.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02396:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAIM2-1:6
3.1 lnc-FAIM2-1:6
4.0 lnc-FAIM2-1:6
4.1 lnc-FAIM2-1:6
5.0 lnc-FAIM2-1:6
5.1 LINC02396:9
5.2 LINC02396:17