Transcript: LINC02397:20

Basic information

LNCipedia transcript ID: LINC02397:20 
HGNC Gene Symbol: LINC02397    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2397
Ensembl Gene ID: ENSG00000266923
Ensembl Transcript ID: ENST00000508671
Location (hg38): chr12:92421531-92483680
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1968 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508671; ENST00000508671.1; RP11-693J15.4-001; OTTHUMT00000366644.1; NONHSAT029888
Alternative gene names: ENSG00000205056; CLLU1; ENSG00000205056.6; RP11-693J15.4; OTTHUMG00000159784.3; ENSG00000266923.1; AC063949.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.1966 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02397:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLLU1.1-1:1
3.1 lnc-CLLU1.1-1:1
4.0 lnc-CLLU1.1-1:1
4.1 lnc-CLLU1.1-1:1
5.0 lnc-CLLU1.1-1:1
5.1 LINC02397:2
5.2 LINC02397:20