Transcript: LINC02398:24

Basic information

LNCipedia transcript ID: LINC02398:24 
HGNC Gene Symbol: LINC02398    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2398
Ensembl Gene ID: ENSG00000256287
Ensembl Transcript ID: ENST00000536666
Location (hg38): chr12:20014780-20098868
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 431 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536666; ENST00000536666.1; RP11-664H17.1-001; OTTHUMT00000401674.1
Alternative gene names: ENSG00000256287; RP11-664H17.1; ENSG00000256287.1; OTTHUMG00000168941.1; LINC02398


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.0947 non-coding 
CPAT coding probability 12.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02398:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDE3A-1:1
3.1 lnc-PDE3A-1:1
4.0 lnc-PDE3A-1:1
4.1 lnc-AEBP2-4:11
5.0 lnc-AEBP2-4:11
5.1 LINC02398:12
5.2 LINC02398:24