Transcript: LINC02401:11

Basic information

LNCipedia transcript ID: LINC02401:11 
HGNC Gene Symbol: LINC02401    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2401
Ensembl Gene ID: ENSG00000257762
Ensembl Transcript ID: ENST00000550185
RefSeq ID: NR_110103
Location (hg38): chr12:103547794-103559815
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3059 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000550185; ENST00000550185.1; RP11-626I20.3-001; OTTHUMT00000407087.1; NONHSAT030377; NR_110103; ENST00000550185.5; NR_110103.1
Alternative gene names: ENSG00000257762; RP11-626I20.3; ENSG00000257762.1; OTTHUMG00000170055.1; ENSG00000257762.5; LINC02401; LOC101929084


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.2718 non-coding 
CPAT coding probability 2.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02401:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAB2-1:1
3.1 lnc-STAB2-1:1
4.0 lnc-STAB2-1:1
4.1 lnc-STAB2-1:1
5.0 lnc-STAB2-1:1
5.1 LINC02401:2
5.2 LINC02401:11