Transcript: LINC02401:13

Basic information

LNCipedia transcript ID: LINC02401:13 
HGNC Gene Symbol: LINC02401    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2401
Ensembl Gene ID: ENSG00000257762
Ensembl Transcript ID: ENST00000551174
Location (hg38): chr12:103547826-103550661
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 713 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551174; ENST00000551174.1; RP11-626I20.3-002; OTTHUMT00000407088.1; NONHSAT030378
Alternative gene names: ENSG00000257762; RP11-626I20.3; ENSG00000257762.1; OTTHUMG00000170055.1; ENSG00000257762.5; LINC02401


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.3141 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02401:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAB2-1:3
3.1 lnc-STAB2-1:3
4.0 lnc-STAB2-1:3
4.1 lnc-STAB2-1:3
5.0 lnc-STAB2-1:3
5.1 LINC02401:4
5.2 LINC02401:13