Transcript: LINC02402:5

Basic information

LNCipedia transcript ID: LINC02402:5 
LNCipedia gene ID: LINC02402
Location (hg38): chr12:42644238-42646479
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 267 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00020763
Alternative gene names: XLOC_010057; linc-PRICKLE1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.9935 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02402:5 no no no no

Available literature

  1. Li (2017), The Diagnostic Value of Whole Blood lncRNA ENST00000550337.1 for Pre-Diabetes and Type 2 Diabetes Mellitus., Exp. Clin. Endocrinol. Diabetes


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRICKLE1-1:2
3.1 lnc-PRICKLE1-1:2
4.0 lnc-PRICKLE1-1:2
4.1 lnc-PRICKLE1-1:2
5.0 lnc-PRICKLE1-1:2
5.1 LINC02402:3
5.2 LINC02402:5