Transcript: LINC02403:3

Basic information

LNCipedia transcript ID: LINC02403:3 
HGNC Gene Symbol: LINC02403    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2403
Ensembl Gene ID: ENSG00000257541
Ensembl Transcript ID: ENST00000548215
RefSeq ID: NR_135022
Location (hg38): chr12:58087892-58093362
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 484 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000548215.1; RP11-58A17.4-001; OTTHUMT00000409395.1; NONHSAT029016; NR_135022.1
Alternative gene names: ENSG00000257541.1; RP11-58A17.4; OTTHUMG00000170496.1; LINC02403; LOC105369785


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.4447 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02403:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XRCC6BP1-2:1
4.0 lnc-XRCC6BP1-2:1
4.1 lnc-XRCC6BP1-2:1
5.0 lnc-XRCC6BP1-2:1
5.1 LINC02403:2
5.2 LINC02403:3