Transcript: LINC02404:5

Basic information

LNCipedia transcript ID: LINC02404:5 
HGNC Gene Symbol: LINC02404    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2404
Ensembl Gene ID: ENSG00000257893
Ensembl Transcript ID: ENST00000546710
Location (hg38): chr12:91877391-91880655
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1188 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT029867; ENST00000546710.2
Alternative gene names: ENSG00000257893.2; RP11-587P21.2; LINC02404


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.764 non-coding 
CPAT coding probability 8.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02404:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLLU1.1-4:2
4.0 lnc-CLLU1.1-4:2
4.1 lnc-CLLU1.1-4:2
5.0 lnc-CLLU1.1-4:2
5.1 LINC02404:3
5.2 LINC02404:5