Transcript: LINC02405:29

Basic information

LNCipedia transcript ID: LINC02405:29 
HGNC Gene Symbol: LINC02405    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2405
Ensembl Gene ID: ENSG00000249345
Ensembl Transcript ID: ENST00000546062
Location (hg38): chr12:127030528-127060349
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546062; ENST00000546062.1; RP11-575F12.1-003; OTTHUMT00000399830.1; NONHSAT031844
Alternative gene names: ENSG00000249345; RP11-575F12.1; ENSG00000249345.2; OTTHUMG00000168456.2; ENSG00000249345.6; LINC02405


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.9838 non-coding 
CPAT coding probability 10.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02405:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC15A4-15:5
3.1 lnc-SLC15A4-15:5
4.0 lnc-SLC15A4-15:5
4.1 lnc-SLC15A4-15:5
5.0 lnc-SLC15A4-15:5
5.1 LINC02405:15
5.2 LINC02405:29