Transcript: LINC02407:28

Basic information

LNCipedia transcript ID: LINC02407:28 
HGNC Gene Symbol: LINC02407    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2407
Ensembl Gene ID: ENSG00000257219
Ensembl Transcript ID: ENST00000553247
Location (hg38): chr12:76259905-76305131
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1083 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553247.1; RP11-54A9.1-001; OTTHUMT00000406354.1; NONHSAT029570
Alternative gene names: ENSG00000257219.1; RP11-54A9.1; OTTHUMG00000169875.1; ENSG00000257219.5; LINC02407


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.033 non-coding 
CPAT coding probability 10.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02407:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZDHHC17-6:6
4.0 lnc-ZDHHC17-6:6
4.1 lnc-ZDHHC17-6:6
5.0 lnc-ZDHHC17-6:6
5.1 LINC02407:13
5.2 LINC02407:28