Transcript: LINC02408:6

Basic information

LNCipedia transcript ID: LINC02408:6 
HGNC Gene Symbol: LINC02408    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2408
Ensembl Gene ID: ENSG00000203585
Ensembl Transcript ID: ENST00000400306
Location (hg38): chr12:67520082-67567126
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1766 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00020188; ENST00000400306; ENST00000400306.2; RP11-542B15.1-001; OTTHUMT00000402126.1
Alternative gene names: XLOC_009791; linc-DYRK2-1; ENSG00000203585; RP11-542B15.1; ENSG00000203585.3; OTTHUMG00000169069.1; LINC02408


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.1253 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02408:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DYRK2-1:2
3.1 lnc-DYRK2-1:2
4.0 lnc-DYRK2-1:2
4.1 lnc-DYRK2-1:2
5.0 lnc-DYRK2-1:2
5.1 LINC02408:3
5.2 LINC02408:6