Transcript: LINC02409:3

Basic information

LNCipedia transcript ID: LINC02409:3 
HGNC Gene Symbol: LINC02409    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2409
Ensembl Gene ID: ENSG00000257920
Ensembl Transcript ID: ENST00000547515
Location (hg38): chr12:97272692-97276209
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 576 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547515; ENST00000547515.1; RP11-541G9.2-001; OTTHUMT00000407383.1; NONHSAT030087
Alternative gene names: ENSG00000257920; RP11-541G9.2; ENSG00000257920.1; OTTHUMG00000170123.1; LINC02409


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.1174 non-coding 
CPAT coding probability 26.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02409:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDK17-3:1
3.1 lnc-CDK17-5:1
4.0 lnc-CDK17-5:1
4.1 lnc-CDK17-5:1
5.0 lnc-CDK17-5:1
5.1 LINC02409:2
5.2 LINC02409:3