Transcript: LINC02411:18

Basic information

LNCipedia transcript ID: LINC02411:18 
HGNC Gene Symbol: LINC02411    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2411
Ensembl Gene ID: ENSG00000256022
Ensembl Transcript ID: ENST00000540490
Location (hg38): chr12:127634096-127636095
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 848 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540490; ENST00000540490.1; RP11-526P6.1-002; OTTHUMT00000399780.1; NONHSAT031875; ENST00000540490.5
Alternative gene names: ENSG00000256022; RP11-526P6.1; ENSG00000256022.1; OTTHUMG00000168451.1; ENSG00000256022.5; LINC02411


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.7997 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02411:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC15A4-10:7
3.1 lnc-SLC15A4-10:7
4.0 lnc-SLC15A4-10:7
4.1 lnc-SLC15A4-10:7
5.0 lnc-SLC15A4-10:7
5.1 LINC02411:9
5.2 LINC02411:18