Transcript: LINC02418:13

Basic information

LNCipedia transcript ID: LINC02418:13 
LNCipedia gene ID: LINC02418
Location (hg38): chr12:130033454-130042342
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3528 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000397340; TCONS_00020179; ENST00000397340.2; RP11-474D1.3-202; NONHSAT031946
Alternative gene names: ENSG00000214039; XLOC_010260; linc-TMEM132D-5; RP11-474D1.4; ENSG00000214039.3; RP11-474D1.3; OTTHUMG00000168373.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.5384 non-coding 
CPAT coding probability 7.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02418:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132D-1:3
3.1 lnc-TMEM132D-1:6
4.0 lnc-TMEM132D-1:6
4.1 lnc-TMEM132D-1:6
5.0 lnc-TMEM132D-1:6
5.1 LINC02418:6
5.2 LINC02418:13