Transcript: LINC02421:3

Basic information

LNCipedia transcript ID: LINC02421:3 
HGNC Gene Symbol: LINC02421    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2421
Ensembl Gene ID: ENSG00000255970
Ensembl Transcript ID: ENST00000542219
RefSeq ID: NR_110063
Location (hg38): chr12:67709047-67729475
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3135 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000542219; ENST00000542219.1; RP11-43N5.1-001; OTTHUMT00000402224.1; NONHSAT029267; NR_110063; NR_110063.1
Alternative gene names: ENSG00000255970; RP11-43N5.1; ENSG00000255970.1; OTTHUMG00000169091.1; LINC02421; LOC101927901


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.033 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02421:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFNG-1:1
3.1 lnc-IFNG-1:1
4.0 lnc-IFNG-1:1
4.1 lnc-IFNG-1:1
5.0 lnc-IFNG-1:1
5.1 LINC02421:2
5.2 LINC02421:3