Transcript: LINC02424:3

Basic information

LNCipedia transcript ID: LINC02424:3 
HGNC Gene Symbol: LINC02424    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2424
Ensembl Gene ID: ENSG00000258220
Ensembl Transcript ID: ENST00000548512
RefSeq ID: NR_135021
Location (hg38): chr12:78326680-78359746
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1264 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000511128; TCONS_00020216; ENST00000548512; ENST00000548512.1; RP11-38F22.1-001; OTTHUMT00000406826.1; NONHSAT029625; NR_135021.1
Alternative gene names: ENSG00000249929; XLOC_010136; linc-E2F7-2; ENSG00000258220; RP11-38F22.1; ENSG00000258220.1; OTTHUMG00000170004.1; LINC02424; LOC105369860


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.0086 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02424:3 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAWR-3:1
3.1 lnc-PAWR-6:1
4.0 lnc-PAWR-6:1
4.1 lnc-PAWR-6:1
5.0 lnc-PAWR-6:1
5.1 LINC02424:2
5.2 LINC02424:3