Transcript: LINC02443:18

Basic information

LNCipedia transcript ID: LINC02443:18 
HGNC Gene Symbol: LINC02443    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2443
Ensembl Gene ID: ENSG00000256115
Ensembl Transcript ID: ENST00000544717
Location (hg38): chr12:5233997-5240103
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 754 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544717; ENST00000544717.1; RP11-319E16.1-002; OTTHUMT00000400474.1; NONHSAT025988; ENST00000544717.5
Alternative gene names: ENSG00000256115; RP11-319E16.1; ENSG00000256115.1; OTTHUMG00000168644.1; ENSG00000256115.5; LINC02443


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.4002 non-coding 
CPAT coding probability 9.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02443:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANO2-2:3
3.1 lnc-ANO2-2:3
4.0 lnc-ANO2-2:3
4.1 lnc-ANO2-2:3
5.0 lnc-ANO2-2:3
5.1 LINC02443:9
5.2 LINC02443:18