Transcript: LINC02444:3

Basic information

LNCipedia transcript ID: LINC02444:3 
HGNC Gene Symbol: LINC02444    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2444
Ensembl Gene ID: ENSG00000258123
Ensembl Transcript ID: ENST00000550723
RefSeq ID: NR_110130
Location (hg38): chr12:73159190-73208317
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1256 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000550723; ENST00000550723.1; RP11-314D7.2-001; OTTHUMT00000405362.1; NONHSAT029486; NR_110130; NR_110130.1
Alternative gene names: ENSG00000258123; RP11-314D7.2; ENSG00000258123.1; OTTHUMG00000169672.1; LINC02444; LOC101928137


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5848 non-coding 
CPAT coding probability 16.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02444:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRHDE-2:1
3.1 lnc-TRHDE-2:1
4.0 lnc-TRHDE-2:1
4.1 lnc-TRHDE-2:1
5.0 lnc-TRHDE-2:1
5.1 LINC02444:2
5.2 LINC02444:3