Transcript: LINC02451:5

Basic information

LNCipedia transcript ID: LINC02451:5 
HGNC Gene Symbol: LINC02451    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2451
Ensembl Gene ID: ENSG00000257164
Ensembl Transcript ID: ENST00000546982
RefSeq ID: NR_135027
Location (hg38): chr12:42646583-42686701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000546982; ENST00000546982.1; RP11-25I15.2-001; OTTHUMT00000403637.1; NONHSAT027788; NR_135027.1
Alternative gene names: ENSG00000257164; RP11-25I15.2; ENSG00000257164.1; OTTHUMG00000169347.1; ENSG00000257164.5; LINC02451; LOC105369738


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.3787 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02451:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPHLN1-2:2
3.1 lnc-PPHLN1-2:1
4.0 lnc-PPHLN1-2:1
4.1 lnc-PPHLN1-2:1
5.0 lnc-PPHLN1-2:1
5.1 LINC02451:3
5.2 LINC02451:5