Transcript: LINC02454:16

Basic information

LNCipedia transcript ID: LINC02454:16 
LNCipedia gene ID: LINC02454
Location (hg38): chr12:65602825-65612997
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000256268.1|ENST00000541391.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -250.4747 non-coding 
CPAT coding probability 23.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02454:16 no no no no

Available literature

  1. Deng (2015), Long noncoding RNA CCAT1 promotes hepatocellular carcinoma progression by functioning as let-7 sponge., J. Exp. Clin. Cancer Res.
  2. Liang (2015), The lncRNA H19 promotes epithelial to mesenchymal transition by functioning as miRNA sponges in colorectal cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MSRB3-2:8
5.0 lnc-MSRB3-2:8
5.1 LINC02454:5
5.2 LINC02454:16