Transcript: LINC02454:21

Basic information

LNCipedia transcript ID: LINC02454:21 
HGNC Gene Symbol: LINC02454    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2454
Ensembl Gene ID: ENSG00000256268
Ensembl Transcript ID: ENST00000539116
Location (hg38): chr12:65602869-65606503
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 589 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539116; ENST00000539116.1; RP11-221N13.3-002; OTTHUMT00000401554.1; NONHSAT029198
Alternative gene names: ENSG00000256268; RP11-221N13.3; ENSG00000256268.1; OTTHUMG00000168899.1; LINC02454


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.5915 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02454:21 no no no no

Available literature

  1. Deng (2015), Long noncoding RNA CCAT1 promotes hepatocellular carcinoma progression by functioning as let-7 sponge., J. Exp. Clin. Cancer Res.
  2. Liang (2015), The lncRNA H19 promotes epithelial to mesenchymal transition by functioning as miRNA sponges in colorectal cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSRB3-2:4
3.1 lnc-MSRB3-2:4
4.0 lnc-MSRB3-2:4
4.1 lnc-MSRB3-2:4
5.0 lnc-MSRB3-2:4
5.1 LINC02454:10
5.2 LINC02454:21